Analysis of scrna-seq in vitro PrE differentation

After looking more into the FACS data, we found out that the gates were set differently. This is a problem as plate full with 2iLIF is basically filled with dead cells. Other plates had the gates set correctly.

Observed problem

Load dataset

The analysis has to be redone as filtering threshold have to be adjusted

Normalize

Visualization

Markers

Trajectory inference

Save session

Save report